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Home >> Plant Biotechnology and Genomics >>Whole Genome Sequencing and Functional Genomics >> Insertional Mutagenesis

Insertional mutagenesis
Another approach for functional genomics involving identification and study of new genes is the use of insertion mutagenesis, which may involve one of the following two approaches: (i) transposon mutagenesis and (ii) T-DNA mutagenesis. In both cases, a known DNA sequence is introduced, which may be randomly inserted at many places in the genome. This insertion of a foreign DNA segment transposon or T-DNA) generally leads to loss of function mutatiol1s or 'gene knockouts' and only rarely leads to gain of function mutations. In each case, phenotype will be altered, suggesting the function of the gene involved in insertional mutagenesis. The insertion sequence (transposon or T-DNA) also allows isolation of the concerned gene which can then be studied. This approach has been extensively utilized for identification and isolation of new genes (see Chapter 8 for some details).

In order to utilize fully the above approach for functional genomics, it is necessary to saturate fully the - genome with insertion mutations. These insertion mutations are being produced in a variety of plant species. In Arabidopsis alone, at least 15,000 such transposon insertion mutations are now available. At Wisconsin (USA), more than 60,000 Arabidopsis T-DNA insertion lines were generated using T-DNA vector pD991. To share this resource with others, in 1999 a 'Knockout Facility' was establised at the University of Wisconsin, as a part of the Arabidopsis Functional Genomics Consortium (AFGC). Researchers may send PCR primers for a gene for which they want a knockout. PCR products of the corresponding knockouts are then supplied to the researchers for further study (for details, readers may consult Plant Physiology. Dec. 2000 pp. 1465-1467).

 

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