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Home >> Plant Biotechnology and Genomics >>Whole Genome Sequencing and Functional Genomics >> Gene Organization

Gene organization
Arabidopsisgenes, in general are compact, each gene having many exons, each about 250 base pairs long and interrupted by short non-coding introns, 160-185 base pairs long. These genes are about 4.6 kilobases apart, in contrast to much longer intergenic regions in many other bigger plant genomes. Small intergenic regions also suggest small regulatory sequences for the genes, which is also in sharp contrast to long regulatory sequences (upto 10 kb) known in many animal genes. The exons in Arabidopsis genes are GC rich (44%), relative to the GC content in introns (32%), which is considered to be a distinctive feature of plant genes.

Summary of features of Arabidopsis genome

Feature

Chromosomes

 

1

2

3

4

5

Total

I. Genome

 

 

 

 

 

 

Length (Mb)

29.11

19.65

23.17

17.55

25.95

115.4

Number of genes

6,543

4,036

5,220

3,825

5,874

25,498

Gene density (per gene)

    4.5

4.9

4.5

4.6

4.4

4.5

Gene size (bp)

2,078

1,949

1,925

2,138

1,974

1,997

Mean peptide length (bp)

   446

421

424

448

429

434

Exons/gene

    5.4

4.9

5.1

5.2

5.3

5.2

Exon size (bp)

   247

259

250

256

242

251

Intron size (bp)

   168

177

159

186

159

170

Number of ESTs (x 103)

30.52

14.99

20.73

16.61

22.89

105.73

II. Proteome

 

 

 

 

 

 

Number of proteins

6,543

   4,036

5,220

3,825

5,874

25,498


 

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