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Home >> Genetics Dictionary >> Gene - Amplification
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Gene Amplification
Repeated copying of a piece of DNA; a characteristic of tumor
2. The process by which a cell specifically increases the copy gene to a greater extent than it increases the copy number of genes composing the remainder of the genome (all the genes which make up the genetic machinery of an organism) .It is therefore distinguished from duplication, which is a precise doubling of the genome preparatory to cell division, and endoreduplication, which leads to endopolyploidy.
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2. Gene amplification results from the repeated replication of the deoxyribonucleic acid (DNA) in a limited portion of the genome, in the absence of or to a much greater extent than replication, in the absence of or to a much greater extent than replication of DNA composing the remainder of the genome.
Thus is formed a cell in which the genes composing a limited portion of the genome are present in relatively high copy number, while the genes composing the remainder of the genome are present in approximately normal copy number, Genes coding for ribosomal RNA.
Ribosomes are the site of cellular protein synthesis. They are particulars which are composed of a specific type of ribonucleic acid(RNA), ribosomal RNA (rRNA), and some 30 specific proteins called ribosomal proteins. The genes coding for rRNA are multicopy genes (there are many identical or nearly identical copies in the genome of most organisms).Gene amplification was first described in the oocytes of certain amphibians.
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The frog oocyte contains approximately 400,000 times as much rRNA as a normal frog liver cell in spite of the fact that the amount of DNA in the oocyte nucleus is approximately the same as that of the liver cell. It has been estimated that, by using the normal genome number of rRNA genes, it would take the frog oocyte approximately 1000 years to synthesize the amount of rRNA found in the oocyte. By amplifying these genes approximately to the level known to occur (1000- to 2000-fold), the oocyte can synthesize this amount of rRNA in 6-9 months
The developmental significance of such amplification lies in the fact that no rRNA is synthesized during early embryogenesis in amphibians. Proteins synthesized during early embryogenesis are synthesized on maternal ribosomes that were produced by the developing oocyte. Amplification of rDNA in the amphibian oocyte occurs extrachromosomally by a rolling-circle mechanism of DNA synthesis similar to that which occurs when certain bacteriophage viruses replicate their DNA.
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Amplification of rDNA also occurs in the macronucleus (the vegetative nucleus) of certain ciliated protozoans. The macronucleus grows by polyploidization, but during macronucleus growth the genes coding for rRNA are replicated to a far greater extent than is, the rRNA genes are amplified Single-copy genesSince gene amplification increases the copy number of a specific region of the genome without altering the copy number of region of the genome without altering the copy number of genes composing the remainder of the genome, it would appear to offer an alternative method for developmental control of gene expression. By increasing the number of copies of a particular gene, the number of gene copies available for transcription could thereby be increased.
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In the ovary f insects, follicle cells produce the Proteinaceous egg shell (or chorion). In the ovary of the fruit fly, Drosophilla melanogaster, the chorion is produced during the final 5h of egg-chamber development. Production of the chorion involves the synthesis of messenger RNAs (mRNAs) for several chorion proteins within a very brief period.
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The genes coding for the various chorion proteins are clustered within the genome, each gene present in single-copy number in germ-line cells. Amplification result in a 15-to 50 fold increase in the number of chorion gene copies per haploid genome. Chorion gene amplification appears to enable the genes to produces the amounts of mRNA necessary to build the egg shell. Although the mechanism of chorion gene amplification has not been completely elucidated, the data suggest that each chorion gene cluster contains a specific origin of DNA replication.
Multiple rounds of replication beginning t this origin give rise to a multiforked structure in which one strand branches into two, each of these branch again and again, and the branched structures contain copies of the chorion gene.
Another single-copy gene which appears to be amplified during development is one of the genes coding for the muscle protein actin during development of muscle cell (myogenesis) in the chick. The actin genes constitute a small family of genes which are present in single or very low copy numbers in the germ line. During myogenesis (formation of skeletal muscle cells)the actin genes coding for skeletal muscle cell actin amplified approximately 85-fold.
Of course, not all single-copy genes which are responsible for the synthesis of a large amount of cell product at a particular stage of development are amplified
The silk gland of the larval silk moth, Bombyx mori, for instance, produces copious amounts of silk fibroin protein. Analysis of DNA from silk glands indicates that the silk fibroin protein. Analysis of DNA from silk glands indicates that the silk fibroin genes are not amplified above the level of ploidy expressed by the silk glands. Similarly, amplification of globin genes is not a factor in the ability of the reticulocyte (precursor cell of the red blood cell) to synthesize large amounts of the protein hemoglobin.
Other examples
In the above-mentioned examples of gene amplification the amplification phenomenon appears to e developmentally regulated, and the amplified copies of the gene are subsequently lost from the cell. Studies on cells in culture have demonstrated "amplification" of genes involved in resistance to specific drugs. Resistance to the chemotherapeuti drug methotrexate by cultured mouse cells is associated with amplification of the dihydrofolate reductase gene. In this case the amplified are passed to daughter cells at the time cell division. Such gene amplification can be either retained by cells or lost from cells when they are grown in the absence of methotrexate. Polymerase chain reaction
The polymerase chain reaction (PCR) is a technique amplifies DNA sequences in laboratory cultures. Beginning with a ample that may contain only one DNA molecule, a selected sequence within that DNA molecule can be amplified millions or even billions of times.To amplify a given segment of DNA, its entire sequence need not be known, but only short sequence near the ends of the segment. Short oligonucleotides, complementary to the end sequences and designed so that their 3 end orient toward the interior of the segment, are synthesized by conventional chemical means.
The DNA in the sample is denatured by heating and then is cooled in the presence of the oligonucleotides, which anneal to the separated DNA strands. The annealed oligonucleotides are then utilized by DNA polymerase as primers for DNA synthesis, replicating the target DNA segment. These simple steps are repeated over and over again, doubling the amount of the target segment in each cycle (see illus). The use of thermostable DNA polymerase (isolated from bacteria that live naturally in hot springs) is an important refinement. Since the polymerase is not denatured when the DNA I heated, it need not to be added at every cycle.
Amplification of DNA by the polymerase chain reaction is carried out conveniently by inexpensive machines that produces the amplified product DNA in a few hours. Target sequences between a few hundred and 10,000 base pairs in length are readily amplified. After 20 cycles, the target DNA is amplified more than a millionfold; after 30 cycle the amplification is over a billionfold.
The utility of polymers chain reaction can be illustrated with a few examples. (1) For molecular biologists, this technique simplified the cloning of known genes, and led to the development of powerful methods to alter DNA sequences laboratory cultures and detect alterations in DNA in organisms. (2) Certain parts of the human genome are sufficiently variable that they can be used to identify a particular individual unambiguously. With the aid of the polymerase chain reaction, DNA from samples as small as a single human hair can be amplified and analyzed to place an individual at the scene of crime. Similar techniques are used to accurately establish paternity. Humans DNA extracted from centuries-old burial sites and amplified by this techniques is being used to trace prehistoric human migrations.
Fig Amplification of DNA using the polymerase chain reaction. The colored region is the target DNA to be amplified. The short arrow represent the oligonucleotide primers
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| A. Heat to seperate strands in presence of oligonucleotide primers and thermostable DNA strands |
B. Cool to allow oligonucleotide primers to anneal to seperated DNA strands |
C. Thermostable DNA polymerase catalyzes 5' and 3' DNA synthesis |
| D. Repeat steps A & C (Cycle 2) |
E. Repeat steps A & C (Cycle 2) |
F. After 20 cycles, the selected sequence has been amplified about 105 fold |
(3) As the molecular genetic basis for more genetic diseases becomes known, polymerase chain reaction-based diagnostic tests for these diseases are possible. For example, prenatal diagnosis of genetic diseases can be carried out with minute samples of fetal tissue. (4) Polymerase chain reaction has also been used to amplify and study DNA from extinct species such as the quagga and the woolly mammoth. In addition, very small amounts of DNA added to the cargo hold of an oil tanker can be used to trace the origins of an oil spill.
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