Web Services as Bioinformatics Tools, Molecular Biology, Biotechnology, Corresponding Web Sites

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Bioinformatics and Data Mining - In Silico Biology Bioinformatics and Data Mining - In Silico Biology - Introduction History of Bioinformatics List of Major Events in Bioinformatics Web Services as Bioinformatics Tools Alignment Tools Some Important Web Sites Commonly Used For Bioinformatics The FASTA Family PatMatch Blast - Earlier Versions Blast - Later Versions ParAlign ProteinEngine and Transeq Interpro Multiple Sequence Alignment Tools Clustalw Phylip BioNumeric Version Multipurpose Analysis Tool / Biotechnix 3D Designing of PCR Primers Tools for In Silico Discovery of SNPs Tools for In Silico Mining of SSRs Assembly Packages for Large Scale Genome Sequencing

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Web Services as Bioinforamatics Tools

The bioinformatics tools that are currently used for molecular biology and biotechnology are the improved versions of the tools that were developed and used in the past (discussed in the previous section). Many of these tools, later discussed in this section, are free and can be downloaded from the corresponding web sites. There are many other tools, which are owned by individual companies and need to be licensed on payment. Several such proprietary softwares and databases, along with the names of bioinformatics companies and their web sites.

Major Publicly Available Databases and Data Mining Tools

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Demiglace EST Clustering Packages Gene Finders Central Repository Biological Literature / PubMed Bioinformatics Instiutes and Databases / Databanks Bioinformatics Institutes - NCBI, EBI, SIB National Centre for Biotechnology Information - NCBI European Bioinformatics Institute EBI Bioinformatics Center kyoto University Swiss Institute of Bioinformatics - SIB The Databases / Data Banks Swiss-Prot, Prosite and ExPAsy GenBank, Flybase, DDBJ RefSeq Bioinformatics Training at ICGEB Training in Universities Bioinformatics Market Data Mining Selected Companies and Their Areas of Interest in the Field of Bioinformatics Limitations of Bioinformatics and Data Mining