PatMatch, BLAST, Protein Sequence, Genomic DNA Sequence, Bacterial Artifical Chromosome, EST Sequence

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Bioinformatics and Data Mining - In Silico Biology Bioinformatics and Data Mining - In Silico Biology - Introduction History of Bioinformatics List of Major Events in Bioinformatics Web Services as Bioinformatics Tools Alignment Tools Some Important Web Sites Commonly Used For Bioinformatics The FASTA Family PatMatch Blast - Earlier Versions Blast - Later Versions ParAlign ProteinEngine and Transeq Interpro Multiple Sequence Alignment Tools Clustalw Phylip BioNumeric Version Multipurpose Analysis Tool / Biotechnix 3D Designing of PCR Primers Tools for In Silico Discovery of SNPs Tools for In Silico Mining of SSRs Assembly Packages for Large Scale Genome Sequencing

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PatMatch

PatMatch allows users to analyze a given sequence against all or against a number of selected sequence datasets available in the databases. This can be done via the Web. The data sets available for this purpose include thefollowing: (i) protein sequences and their structures, (ii) genomic DNA sequences, (iii) bacterial artificial chromosomes (BACs), (iv) EST sequences, etc. PatMatch (developed as Arabidopsis database in 1999) allows users to find motifs by entering a regular expression patterns or a simple string of less than 20 characters.

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