ParAlign, Exploits Parallelism, Optimal Ungapped Alignment, Diagonals, BLAST

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ParAlign

The ParAlign programme, produced in 2001, initially exploits parallelism to perfonn a very rapid computation of the exact optimal ungappeda alignment for all diagonals in the alignment matrix. Consequently this programme is more effective than the programmes of the BLAST family in tenns of speed, although several facilities available in BLAST are not available in ParAlign (parallelism involves division of a major task into small tasks that are perfonned in parallel to increase the speed).

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