Alignment Tools, Local Sequence Alignment Tools, Query Sequence, Structural Genes, DNA, Protein, Polypeptide Encode

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Bioinformatics and Data Mining - In Silico Biology Bioinformatics and Data Mining - In Silico Biology - Introduction History of Bioinformatics List of Major Events in Bioinformatics Web Services as Bioinformatics Tools Alignment Tools Some Important Web Sites Commonly Used For Bioinformatics The FASTA Family PatMatch Blast - Earlier Versions Blast - Later Versions ParAlign ProteinEngine and Transeq Interpro Multiple Sequence Alignment Tools Clustalw Phylip BioNumeric Version Multipurpose Analysis Tool / Biotechnix 3D Designing of PCR Primers Tools for In Silico Discovery of SNPs Tools for In Silico Mining of SSRs Assembly Packages for Large Scale Genome Sequencing

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Alignment tools

Local sequence alignment tools. Local alignment tools allow us to find out the location of a query (input) sequence in the sequences available in the database (a query sequence is one which is fed to the computer, and about which information is sought). Therefore, it helps to find out the identity of a query sequence. Sometimes it will also help in discovery of structural genes and regulatory sequences, even when the query sequence (DNA or protein) makes only a part of the gene or of a polypeptide encoded by this gene. Even conserved repetitive sequences like SSRs or retrotransposons can be searched in the databases using local alignment tools, In fact these tools have a very wide spectrum of uses including basic studies like ‘taxonomy and evolution’ to applications in ‘crop bredding’ and ‘human health care’.

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