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Home >> Dictionary of Bioinformatics, Biochemistry, Biotechnology >> Gene Splicing - Genetic Algorithm

Gene replacement
(gene knockin) The incorporation of a transgene into a chromosome at its normal location by homologous recombination. This replaces the copy of the gene originally present at the locus.

Gene repressor protein
A gene regulatory protein that prevents transcription initiation.

Gene sequencing
The technique of deducting the nucleotides sequence of a gene. See DNA sequencing.

Gene splicing
A stage in the processing of eukaryotic mRNA in which the noncoding intervening sequences (introns) are removed from the primary RNA transcript (hnRNA), and the coding exons are joined together to form the mature mRNA molecule.

Gene spread
The escape and spread of modifying genes into the wider ecology. There are two ways in which gene spread may occur. Crops remaining from one year termed volunteer crops may contaminate the next year’s crops. In the second method, known as gene flow, pollen from GM crops may drift away from the field and fertilise nearby weed plants creating hybrids that are weeds carrying the GM trait.

Gene squelching
A phenomenon in which a transcription factor that is overexpressed not only activates all its target genes but sequesters by protein-protein interactions, components of the basal transcription apparatus of the genes that it does not normally regulated leading to global downregulation.

Gene subtraction
Use of antisense RNA for reducing the activity of a specific gene either partially or completely.

Gene superfamily
A cluster of evolutionarily related sequences consisting of homologous gene families, which are clusters of genes from different genomes that include both orthologs and paralogs.

Gene Tool
A tool designed for DNA sequence analysis.

Gene tracking
Following the inheritance of a specific gene from generation to generation.

Gene transfer
Introduction of a new DNA into an organism by a variety of methods such as electroporation, microinjection, viruses, etc.

Gene translocation
The movement of a gene from one chromosomal locus to another.

Gene trap
A entrapment vector that carries a species a splice acceptor site responding to endogenous splice donors after intron insertion. See entrapment vector.

Genera
See genus.

General acid-base catalysis
Catalysis involving proton transfer(s) to or from a molecule other than water.

 

Gene symbol
Symbols of human genes designated by scientists who discovered the genes using the guidelines developed by the HUGO Gene Nomenclature Committee. These symbols generally consist of not more than six upper case letters or a combination of uppercase letters and Arabic numbers. Gene symbols start with the first letters of the gene name such as INS for the insulin gene.

Gene therapy
The treatment of inherited diseases by introducing into the cells of affected patients the wild-type (functional) copy of the defective gene that has caused the disorder. If reproductive calls are modified, it is referred to as germ-line or heritable gene therapy. If nonreproductive (somatic) cells are modified, the procedure is termed somatic-cell or non-inheritable gene therapy.

Gene shaving
A statistical method that identifies subsets of genes with coherent expression patterns and large variation across conditions.

Gene shears
See ribozyme.

Gene silencing
The turning off of a gene. This can occur at the RNA level by antisense RNA or RNA interference. See antisense and RNA interference.

General recombination
Recombination that takes place between homologous chromosomes at homologous sites.

General transcription factors
Proteins whose assembly around the TATA box is required for the initiation of transcription of eukaryotic genes.

Generalised transduction
The process by which any bacterial gene and any region of the chromosomes is transferred by lytic phages.

Generally Regarded as Sage (GRAS)
A designation given in the US to foods, drugs, and other substances that are used for long periods of time without causing any illness to humans, even though they have not been tested for toxicity. Some host organisms used in recombinant DNA experiments have also been given this status.

Generation time
The time taken for a population of single-celled organisms to double its cell number.

Genes
A database that stores functional information about genes and their products.

Genetic algorithm
A search algorithm inspired by the principles of evolution that searches through a population of initial solutions encoded by applying a predefined fitness measurement to each solution and selecting those with the highest fitness for reproduction. New solutions can be generated during this phase by crossover and mutation operations, defined in the encoded solutions. These are used in molecular simulations such as docking and folding of proteins.

Genetic code
The sequence of triplet nucleotides (codons) on the mRNA which determines the sequence of amino acids in a protein. The set of 64 codons that code for all the 20 amino acids and the three termination codons.

The genetic  code

First position

Second position
U        C        A       G

Third position

U

Phe   Ser      Tyr     Cys
Phe   Ser      Tyr     Cys
Leu   Ser      Stop  Stop
Leu   Ser     Stop   Trp

U
C
A
G

C

Leu   Pro     His     Arg
Leu   Pro     His     Arg
Leu   Pro    Gln      Arg
Leu   Pro    Gln      Arg

U
C
A
G

A

Ile     Thr    Asn      Ser
Ile     Thr    Asn      Ser
Ile     Thr    Lys      Arg
Met   Thr    Lys      Arg

U
C
A
G

G

Val    Ala    Asp     Gly
Val    Ala    Asp     Gly
Val    Ala    Glu     Gly
Val    Ala    Glu     Gly

U
C
A
G


Genetic complementation
A phenomenon in