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Home >> Dictionary of Bioinformatics, Biochemistry, Biotechnology >> Divergent Transcription DNA Fingerprinting
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Divalent
An atom or radical group with two valences that has the ability to combine with two different atoms or molecules.
Divergence
The percent difference in sequence between (1) two related DNA sequences (2) amino acid sequences between two proteins
Divergent evolution
See adaptive radiation
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Dizygotic twins
Two egg twins. A pair of individuals who arose from separate and independent fertilization of two ova but shared same uterus.
DL convention
A method for describing enantiomers based on a comparison of their structures to D-glyceraldehyde and L alanine.
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DMSO
See dimethylsulphoxide.
DMT
Dimethoxytrityl, A chemical used as a blocking group to prevent unwanted reactions during oligonucleotide synthesis.
DNA
(deoxyribonucleic acid; formerly spelt desoxyribonucleic acid). The unit of heredity in most life forms. The information rich molecules that carries the genetic message and controls all cellular functions. It comprises the genes and non coding elements.
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DNA is a macromolecules composed of a long chain of deoxyribonucleotides linked by phospho-diester bonds. Each deoxyribonucleotide contains a phosphate group, the five carbon sugar 2’ deoxyribose and a nitrogen containing base (purine or pyrimidines).
The genetic material in most organisms and organelles is double stranded DNA. Some viral genomes contain single stranded DNA or single stranded DNA, the two polynucleotide strands run in opposite (antiparallel) directions and are coiled round each other in a double helix. Purine bases (adenine, guanine) n one strand specifically hydrogen bond with pyrimidines bases (thymine, cytosine) on the other strand, according to the base pairing rules: A pairs with T; G pairs with c. The diameter of the double helix is 20Å (2.0 nm). Native DNA, which is in the B form has a tight handed helical conformation, with each chain making a complete turn every 34 Å (3.4nm), or once every ten bases. See also mtDNA.
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DNA chip
A DNA microarray used for the analysis of gene expression. Oligonucleotides or DNA segments generated by chemical synthesis or PCR are used in constructing the array on a soil surface such as glass slides, silicon chips or nitrocellulose sheets.
DNA cloning
The multiplication of DNA molecules or fragments as clones
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Diverticulum
A pouch or sac that occurs normally or is created by herniation.
Divided gene
A split gene with exons at distinct loci, which must be transcribed separately and joined by trans splicing
DNA affinity chromatography
A technique used for the purification of sequence specific DNA binding proteins by their binding to a matrix to which the appropriate DNA fragments are attached .
DNA amplification
Multiplication of a segment of DNA into millions of copies chiefly by the polymerase chain reaction (PCR). Other amplification systems that are being developed include ligase chain reaction (LCR) and nucleic acid sequence dependent amplification.
DNA bank
Storage of DNA, which may or may not be the complete genome, but accompanied b inventory information.
DNA construct
A DNA molecules inserted into a cloning vector, usually a plasmid.
Divergent transcription
Initiation of transcription at two promoters that face opposite direction such that transcription proceeds in both directions from a central region.
DNA damage checkpoints
Checkpoints in the cell that arrest the cell cycle in response to DNA damage until the damage is repaired. For example, ionizing radiation activates several signal transduction pathways depending on the phase of the cell cycle. While cell cycle arrest in G1 and S prevents replication of damaged bases, arrest in G2 permits double strand breaks to be repaired before mitosis. Proteins encoded by the tumour suppressor genes ataxia telangiectasia mutated (ATM) and chk2, which encode protein kinases play a role in DNA damage check points Mutations in these genes cause cancer.
DNA delivery system
A term used for any method that transfers DNA or a gene f interest into a recipient host
DNA diagnosis
The use of DNA polymorphisms to detect the presence of a specific allele or DNA sequence that is associated with a disease or syndrome.
DNA directed RNA polymerase
See DNA polymerases.
DNA directed RNA polymerase
A group of enzymes that catalyses transcription to form RNA from a DNA template. They can initiate RNA synthesis de novo. In eukaryotes, three forms of the enzymes have been recognised based on the sensitivity to a amanitin, and the type of RNA synthesized
DNA driven hybridisation
The reaction of an excess of DNA with RNA.
DNA fibre fish Fluorescence in situ hybridisation (FISH) applied to naked DNA.
DNA fingerprint
The unique pattern of DNA fragments that can be identified by Southern blotting (using a probe that binds to a polymorphic region of DNA) or by polymerase chain reaction(using primers flanking the polymorphic region). See genetic fingerprinting.
DNA fingerprinting
A technique developed by Alec Jeffreys for the identification of individuals based on the fact that highly variable regions of the genome termed variable number of tandem repeats (VNTRs) in minisatellites are specific to each individual. VNTRs are inherited in a Mendelian fashion and are hypervariable when many alternate alleles exist in the population. VNTRs may be single locus repeats found at one locus or multi locus repeats found at many loci.

DNA fingerprinting may be carried out by digesting DNA with a restriction enzymes such as Hinfl which cuts outside VNTR region followed by side fractionation of DNA fragments by gel electrophoresis, Southern transfer and detection by hybridisation with a probe. PCR based method is however more sensitive and can amplify DNA with very low copy number.
The minisatellite probes 33.6 and 33.15 used by Jeffreys detect minisatellites at multiple loci and 17 variables fragments are generated for each individuals varying in size form 3.5 to 20 kb. Microsatellite tetranucleotide (CAGA) repeats are however preferred for forensic analysis. DNA fingerprinting works on the principle of exclusion and a single difference between sample and suspect rules out suspect. If the frequency of genotype is 10-8, the probability of getting a chance match is 1 in 108. DNA fingerprinting has applications in forensic science, paternity determination, pedigree analysis, migration studies and genetic analysis of agricultural crops and animals.
DNA footprinting
A technique for determining protein binding sites on DNA.
dna genes The genes encoding the DNA proteins (dnaA, dnaB, dnaC) that have a role in initiation of DNA replication at the replication origin in prokaryotes.
DNA glycosylase
An enzyme that recognises and removes bases that have undergone deamination generating apurinic or apyrimidinic sites.
DNA gyrase
An enzyme that catalyses the introduction of negative supercoils or relaxes positive supercoils in DNA. See Topoisomerase.
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